modules/custom_tabulartogseacls
Make a GSEA class file (.cls) from tabular inputs
gseaclsconverttabular
Input
name:type
description
pattern
Groovy Map containing metadata including an id, the sample sheet column used to define groups, and optionally a separator to override defaults e.g. [ id:‘test’, variable:‘treatment’, separator:’,’ ]. The way these values are passed to the associated module parameters is then defined via an ext.args specification for the process from the workflow, like: ext.args = { [ “separator”: “\t”, “variable”: “$meta.variable” ] } (‘variable’ is compulsory here).
Output
name:type
description
pattern
A categorical class format file (.cls) as defined by the Broad documentation at https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats
included in
maintainer
